Mr. Monk and the Secret Santa - S4-E9
Continuity mistake: When Alice is in Stottlemeyer's office and Stottlemeyer can't find Terry's present, Alice says, "But what about..." indicates the bottle of port, and then drops her arms to her sides. In the next shot (when we see Alice from the back), we can tell by the position of her elbows that her hands are not at her sides, but in front of her.
Mr. Monk and the Secret Santa - S4-E9
Continuity mistake: When Alice confesses to the murder in her kitchen, a large green plastic bowl that's been sitting on the counter disappears between shots. (00:38:05)
Mr. Monk and the Secret Santa - S4-E9
Continuity mistake: In the beginning scene it shows someone injecting a liquid, with ease, into what appears to be a corked wine bottle. Then around the 13-min mark you see the Captain re-gift the bottle and when the person opens it, it's a pull cork with a hard top, something a needle would not easily go through. (00:00:10 - 00:13:23)
Answer: Stottlemeyer was already upset after the phone call. He was trying to get "Kevin" (who would have to be a judge, but no further character information is given) to issue a restraining order with no evidence of needing one, except that Adrian Monk said she needs one. Kevin said he would need to "sleep on it." So it's clear they've been trying to provide protection and unable to get the results they need, which seems to be based on no one trusting Monk the way Stottlemeyer does. He's just angry that they failed to protect Linda despite all their work. Although it does feel like a scene was cut, or altered, from the show that shows the futile attempts to protect Linda which built up to his outrage.
Bishop73